python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end1.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T014_b11_Heart_PCW 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T014_b11_Heart_PCW.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T032_b11_Heart_PCW12 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T032_b11_Heart_PCW12.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T104_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T104_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T30_b11_Heart_PCW17 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T30_b11_Heart_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T361_b11_Heart_PCW20 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T361_b11_Heart_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T379_b11_Heart_PCW15 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T379_b11_Heart_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T407_b11_Heart_PCW19 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T407_b11_Heart_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL161_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL162_b11_RNA_HeartRedo.barcodes_annotated.RNA_UMI.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L1-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L2-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L3-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-0-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-1-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-2-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-3-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-4-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-5-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-6-9/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-0/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-1/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-2/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-3/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-4/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-5/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-6/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-7/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL145_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL146_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL147_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL148_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL149_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL150_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL151_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T92_b11_Heart_PCW18 2 -revcomp | gzip > L4-7-8/SL152_b11_ATAC_HeartRedo.barcodes_annotated.T92_b11_Heart_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T107_b12_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T107_b12_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T132_b12_lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T132_b12_lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T164_b12_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T164_b12_Lung_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T226_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T226_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T256_b12_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T256_b12_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T286_b12_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T286_b12_Lung_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T304_b12_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T304_b12_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL153_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL154_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL155_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL156_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL157_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL158_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL159_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.end2.fastq.gz 2 barcode_T408L_b12_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL160_b12_ATAC_LungRedo.barcodes_annotated.T408L_b12_Lung_PCW19.end2.fastq.gz